November 13, 2013 · 5:30 PM
Abstract for the paper we will be discussing:
Synthetic analog computation in living cells
Ramiz Daniel1,2,3, Jacob R. Rubens2,3,4, Rahul Sarpeshkar1,3,4,5,6,7* & Timothy K. Lu2,3,4,5,6,8*
A central goal of synthetic biology is to achieve multi-signal integration and processing in living cells for diagnostic, therapeutic and biotechnology applications1. Digital logic has been used to build small-scale circuits, but other frameworks may be needed for efficient computation in the resource-limited environments of cells2,3.Here we demonstrate that synthetic analog gene circuits can be engineered to execute sophisticated computational functions in living cells using just three transcription factors. Such synthetic analog gene circuits exploit feedback to implement logarithmically linear sensing, addition, ratio metric and power-law computations. The circuits exhibit Weber’s law behaviour as in natural biological systems4, operate over a wide dynamic range of up to four orders of magnitude and can be designed to have tunable transfer functions.Our circuits can be composed to implement higher-order functions that are well described by both intricate biochemical models and simple mathematical functions. By exploiting analog building-block functions that are already naturally present in cells3,5, this approach efficiently implements arithmetic operations and complex functions in the logarithmic domain. Such circuits may lead to new applications for synthetic biology and biotechnology that require complex computations with limited parts, need wide-dynamic-range biosensing or would benefit from the fine control of gene expression.
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