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WORKSHOP: Graph Databases in Life Sciences

When: Monday, 12th of November, 2012

Where: Congrescentrum Het Pand, Onderbergen 1, 9000 Gent

What: a specific workshop to enable a better functional and technical understanding of what Graph Databases like Neo4j can do for BioTech organisations

Audience: technical architects, technical consultants, project managers, and technically interested business owners


[masked]am Registration

[masked]am Introduction and welcome Lennart Martens

[masked]am GraphDB overview, Michael Hunger, Neo Technology Community team

[masked]am Use case 1 presentation: metaproteomics Lennart Martens & team

[masked]am break

[masked]am Neo4j APIs: how to use a graph database, Michael Hunger, Neo Technology Community team

11.15am-12.00am Bio4j presentation by Pablo Pareja, Era7

12.00am-1.00pm LUNCH

[masked]pm presentation Anthony Liekens, University of Antwerp

[masked]pm The power of graphs to analyze biological data. Davy Suvee, Janssen Pharmaceutica

[masked]pm Workshop phase 1

Reactome integration
- task 1: initiate neo4reactome
- task 2: create DAO
- task 3: Import reactome into graphdb Lennart Martens & team, Neo4j community team

[masked]pm Coffee break

[masked]pm Workshop phase 2: Reactome analysis
- task 4: paths between two compounds
- task 5: cypher playground Lennart Martens & team, Neo4j community team

[masked]pm USER Questions, discussion, closing remarks Moderated

[masked]pm Reception

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