Cure Aging with AI - Part 1/6 Importing Data with Pandas
Details
We will start coding!
(Meeting for Thursday 4th of July is cancelled because of the holiday. Future meetings will be on Wednesdays at Bella Vista 6-8 pm)
Agenda
- Recap of last meeting and overview of the code on a big screen
- Biology introduction to the central dogma of biology
DNA ->RNA->Protein & RNAseq - Setup Google Colab notebook and connect it to google drive
- Loading and merging study data with python pandas module
- Feature selection
Colored code can be found in our Slack Channel under meeting-recaps:
You can prepare by watching these youtube videos:
Biology: https://www.youtube.com/watch?v=gG7uCskUOrA
Python Pandas Data Frame: https://www.youtube.com/watch?v=F6kmIpWWEdU
[Short recap from meeting Thurs 6/27th:
Our project goals:
-
- Reproducing the AI study: 'Predicting age from transcriptome of human fibroblasts'
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1599-6
- Reproducing the AI study: 'Predicting age from transcriptome of human fibroblasts'
- Evaluating study using our own data set
- Future Meetings will be held on a weekly basis on Wednesdays at the Bella Vista Cafe in La Jolla
- Meetings will be structured into a theoretical and practical part
- Tutors will explain the code sections to group members (1 hr)
- Members will reproduce the code in small groups with help of tutors.(1 hr)
- Software: Python and Google Colab]
